SE0430110

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2480
  • Brassica rapa
  • SE0430110
  • hAT
  • Hat37
  • A06:25991999-25992188
  • CTAAAGAG
  • AGCAGGGCCGGCCTTAGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
CTAAAG               A   AATTCGTA     CA     AACA   TTCCAAATTTTTTTAAAAAAATTTACATACGAATAGGTTTCCGGAAAA
      AGCAGGGCCGGCCTT GGA        TGAAA  TTTGT    GGT                                                
      ||||||||||||||| |||        |||||  |||||    |||                                                 
      TCGTCCCGGCCGGGA TCT        ACTTT  AAACA    CTG                                                
GAGAAA               C   -----AAA     -C     ----   ATACAGATATATTTAAAAAAAAAAAATGTTTAAACCCCCAGATTTAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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