SE0430111

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2481
  • Brassica rapa
  • SE0430111
  • hAT
  • Hat38
  • A01:3271199-3271805
  • GTTAGTAT
  • ATCCCTGTTCGAAAACGCGG

Secondary structure and sequence

TSD    TIR
5'



3' 
GTTAGT              AC    GTACTAC     A        C A   -------      CGGCGGTGCTTGGCCGTGGCGAGTTGGCTGTGGTGGGCCAATTAATCGGCAACAACAAATTTTTTTTTTTTTTTGGGTTTTGAATGCTTAAAATCTTGTATTTTTATGACAGATGTATAAGTTTTAAGTATAAAAACATGAAAACGCACCAAAATCTGATGTTATGTGTGATTATAAACGTTTTACGGCCATGGAAAACCTGTAAAATTGAAAACCCTAAAGGCAGATGGGGAAGATGAAGACGA
      ATCCCTGTTCGAAA  GCGG       GGGTG TTAGTCGG G GGA       GGCGCT                                                                                                                                                                                                                                                     
      ||||||||||||||  ||||       ||||| |||||||| | |||       ||||||                                                                                                                                                                                                                                                      
      TGGGGACAAGCTTT  TGCC       TCCGC GATCAGCC C CCT       CCGGAT                                                                                                                                                                                                                                                     
TATGAT              GA    ------A     -        - G   GCTATAC      CGCTCAATTGTTAATTAGCCCCTCATTAGCCCCTAATTAGCCCTGGATCAAAAATAAAAATAAAAATAAAAATATTTATATAATACGTAGTAATCAGTTAAACGTACTGTTATATGTTAATTAACTTCATCGGACCACCAATGTATTAGAAACGGGTCGCATTCTTTGGGGCCAAGCTGGGACCTAGGTGCACAAAAAGAAGAAAAATTAAAAAAAACGGAAATTACTTCCCATAATAGCAGTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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