Plant MITE

SE0450112

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2482
Brassica rapa
SE0450112
PIF/harbinger
To7
Scaffold000365:5059-5279
TAA
AGGGCATGATTAACCCCGGTATCTTAG

Secondary structure and sequence

TSD TIR

5'

3'

TA   G                A      TCGG        AC   TGATTTGACATTTTTTTTGTTTTTATACACTTTTCGGCTAAGAGACGGTTCTTATATCTCTTATT
  AGG CATGATTAACCCCGGT TCTTAG    GGTTCTTA  TCA                                                                 
  ||| |||||||||||||||| ||||||    ||||||||  |||                                                                  
  TCT GTACTAATTGGGGCTA AGAATT    TCAAGAAT  GAA                                                                 
AA   G                G      GATA        -C   GCCAATTCTCTTCCAAGAATCGAAAAGAATCTAAAATTGATTCTTTTCGATTCTTGTCAGAGAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0450112

TAAGGGCATGATTAACCCCGGTATCTTAGTCGGGGTTCTTAACTCATGATTTGACATTTTTTTTGTTTTTATACACTTTTCGGCTAAGAGACGGTTCTTATATCTCTTATTTGAGAGACTGTTCTTAGCTTTTCTTAGTTAAAATCTAAGAAAAGCTAAGAACCTTCTCTTAACCGAAGCTAAGAACTATAGTTAAGAGATCGGGGTTAATCATGGTCTAA

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