SE0410117

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2487
  • Brassica rapa
  • SE0410117
  • Tc1/Mariner
  • St1
  • A06:13463795-13464044
  • TA
  • TACTCCCTCTGTTCCTAAAAATAGGATGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
                              --     AGAAACACGCATATTAAGAAAGCTACTTTTTGTCTAAAAAATATCATTAAAACTATAAATTTATAATATCCAACCAATTACAAAATAGA
TACTCCCTCTGTTCCTAAAAATAGGATGTT  TAGGT                                                                                         
||||||||||||||||||||||||||||||  |||||                                                                                          
ATGAGGGAGACAAGGATTTTTATTCTACAA  TGTCT                                                                                         
                              AA     AAAAAGTACAAGATTATATATTCTACAAAAGTAAAAAGATCCATTGAAAATGAAATAATTTTTGACACATGGGTTAGTATAAAATAATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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