SE0430118

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2488
  • Brassica rapa
  • SE0430118
  • hAT
  • Hat14
  • A07:6599170-6599720
  • AGCTGAAC
  • AGCT

Secondary structure and sequence

TSD    TIR
5'



3' 
        GAAC     G     -------     ACCCGATATCCGAAGTGGCACCCGAACCCGATCCGAAAAACCCGAACCGAAATCCGAACCGAAGTAGCAAAATACCCGAACGGGTATTGAATTAGGAGAGATTGGATACCCGAACCCGAATGGATAATATCCGAACCCGAATGGATATCCGAAGATAACCGAACATATGTATAATTAACCTTATATTTCTAGTTTACATCTCTCATTTTATATAAAATATTTATATTGATACTACACATACTTTAAGT
    AGCT    TAGGG TGGGC       ACTTT                                                                                                                                                                                                                                                        
    ||||    ||||| |||||       |||||                                                                                                                                                                                                                                                         
    TCGA    ATCCC ACCCG       ATGGG                                                                                                                                                                                                                                                        
CAAG    ----     G     CAAGCCC     CAAGCCCAAGCCCAGCCCATAAAGCCTAAAAGCCCATAAAGCCATATCTCCATATCTTGGGCAAGCCCATAAAGATATGAAGCCTAGCCCAAGCCCATAAAAATCAAGCCCAAGCCAATAAAGCCTAGCCCAAGCCTATAAATCTAAAACTTTTTTTTTTAATTTTAAAAGTAACTTTATTTTTCAAACTGTACGTAAAATACGCTTATCGTTTAGTAGAAGATGCATTAACATACATATAGTATACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3