SE0450119

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2489
  • Brassica rapa
  • SE0450119
  • PIF/harbinger
  • To6
  • A03:21902570-21902737
  • TAA
  • AGACCATCTCCAACTCATATCTATTTTTTCCTTTATAATTCTCACAAAAATAGAATAACTCTATTATTGAATAAGTTTTGCTCCAATGGTTTATTCTATAATAGAGTTATTCTATTTTTGTGAGAATTATAGAGGAAAAAATAAGTATGGATTGGAGATGCCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA  AC         C      C                                              T       -TT   C
  AG  CATCTCCAA TCATAT TATTTTTTCCTTTATAATTCTCACAAAAATAGAATAACTCTATTAT GAATAAG   TTG 
  ||  ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||   ||| T
  TC  GTAGAGGTT GGTATG ATAAAAAAGGAGATATTAAGAGTGTTTTTATCTTATTGAGATAATA CTTATTT   AAC 
AA  CC         A      A                                              T       GGT   C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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