Plant MITE

SE0430120

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2490
Brassica rapa
SE0430120
hAT
Hat39
A07:3253540-3253898
ATGTTGTG
G

Secondary structure and sequence

TSD TIR

5'

3'

AT    T     --   AAATTAAATTTCTTGTTGGTCAAGGTACATACACGAATGCTTCCTCTCAGGGCCGGGCCTGAGCACAGGCTCATCAAGCATTAGCTTAAGGGCCGATAGTGTTAAAAATAATTTAGGGGCCAATTACATCAAATGTCTGACAGTTCAGATGGCCAATAACCTAG
  GTTG GGTAA  GCC                                                                                                                                                                    
  |||| |||||  |||                                                                                                                                                                     
  GGTG TAAGA  CGA                                                                                                                                                                    
 C    G     TC   TATATCGTTTTTATACTCTTTTTTTACGTTAACTCTATTCTCCTTCGTCCCGGCCCGGAGTGTATACATCCAGGTCTTCGTTGATTTTAAATAAACCGGGATGTTGTTGAAAAAGATTTTTTTAACAACGCTTAAGCAACATATACGCAAAGCTTGAGCCGGGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430120

ATGTTGTGGTAAGCCAAATTAAATTTCTTGTTGGTCAAGGTACATACACGAATGCTTCCTCTCAGGGCCGGGCCTGAGCACAGGCTCATCAAGCATTAGCTTAAGGGCCGATAGTGTTAAAAATAATTTAGGGGCCAATTACATCAAATGTCTGACAGTTCAGATGGCCAATAACCTAGGGGGCCGAGTTCGAAACGCATATACAACGAATTCGCAACAATTTTTTTAGAAAAAGTTGTTGTAGGGCCAAATAAATTTTAGTTGCTTCTGGACCTACATATGTGAGGCCCGGCCCTGCTTCCTCTTATCTCAATTGCATTTTTTTCTCATATTTTTGCTATATAGCCTAGAATGGTGGC

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