Plant MITE

SE0410122

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2492
Brassica rapa
SE0410122
Tc1/Mariner
St12
A02:25898619-25898860
TA
TACTCCCTCTGTTTTTAAATGTAGGTAGTTTTAGCAAAAAG

Secondary structure and sequence

TSD TIR

5'

3'

                  A              GCA         -T -   CA   TATAAGTAGTTTACATATTTCAATGCACATTTTTCATTTATTGGATATTGTGTGACCAATAAAATA
TACTCCCTCTGTTTTTAA TGTAGGTAGTTTTA   AAAAGAGTT  G TTT  CAA                                                                  
|||||||||||||||||| ||||||||||||||   |||||||||  | |||  |||                                                                   
ATGAGGGAGACAAAAATT ATATTCATCAAAAT   TTTTCGTGT  A AAA  TCT                                                                  
                  A              GAA         TT T   --   TTCAACAATAGATTTTTTTATATAGTAAATTAGTTAATTAAGTTGGTTAATATTTTTCGAATTATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0410122

TACTCCCTCTGTTTTTAAATGTAGGTAGTTTTAGCAAAAAGAGTTTGTTTCACAATATAAGTAGTTTACATATTTCAATGCACATTTTTCATTTATTGGATATTGTGTGACCAATAAAATAATATTAAGCTTTTTATAATTGGTTGAATTAATTGATTAAATGATATATTTTTTTAGATAACAACTTTCTAAATATTTGTGCTTTTAAGTAAAACTACTTATAATTAAAAACAGAGGGAGTA

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