Plant MITE

SE0450125

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2495
Brassica rapa
SE0450125
PIF/harbinger
To2
A03:10324867-10325125
TTA
AGACCATCTCCAATGGCTTACTCTATTTTTTACTCTAAAATAGAGT

Secondary structure and sequence

TSD TIR

5'

3'

TT   C          GG                              AACTCTATAA      TT   TT              -        AGAGTAGAAAATAGAGTGATGAACAAAAAAAAACAAATTACT
  AGA CATCTCCAAT  CTTACTCTATTTTTTACTCTAAAATAGAGT          TAGAGT  GAG  TGCTCCAATGGTAC TCTATTTT                                          
  ||| ||||||||||  ||||||||||||||||||||||||||||||          ||||||  |||  |||||||||||||| ||||||||                                           
  TCT GTAGAGGTTG  GGGTGAGATAAAAAGTGAGATTTTATCTCA          ATCTCA  TTC  ACGAGGTTACCATG GATAAAGA                                          
AT   C          --                              ---------A      -T   TT              A        GTGAGATATTATCTCACTTTTTATCCAAATGAGGTTTATATC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0450125

TTAGACCATCTCCAATGGCTTACTCTATTTTTTACTCTAAAATAGAGTAACTCTATAATAGAGTTTGAGTTTGCTCCAATGGTACTCTATTTTAGAGTAGAAAATAGAGTGATGAACAAAAAAAAACAAATTACTCTATATTTGGAGTAAACCTATTTTTCACTCTATTATAGAGTGAGAAATAGAGTACCATTGGAGCATTCTTTACTCTAAACTCTATTTTAGAGTGAAAAATAGAGTGGGGTTGGAGATGCTCTTA

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