SE0450126

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2496
  • Brassica rapa
  • SE0450126
  • PIF/harbinger
  • To15
  • A06:2942488-2942774
  • TGG
  • TGGGGGTGATTGGTTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
                 G   ----   -  AGTGACTTTAGCTTTAATTTCCATCTACAACCTTAAATACTACCAATCATGATTTATTTTAGTTTTTAAAGCTACAACCCAAAACCTAAAGCTACAGCAAAAACAGACAAAAAAT
TGGGGGTGATTGGTTGG TTG    TAG GA                                                                                                                   
||||||||||||||||| |||    ||| ||                                                                                                                   G
ACCCCCACTAACCAACC TGA    GAT TC                                                                                                                   
                 -   CATT   A  TTTTAAATGAAATCTTAAATCAGACATCTTAAAAAACTAAATCGAAATTCCCAACATCGAAATTTTAAAGGATGTCGATTTTCTTACTCCGAAATCTTTTATTCTAAAAATGTTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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