SE0410127

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2497
  • Brassica rapa
  • SE0410127
  • Tc1/Mariner
  • St6
  • A01:1514091-1514333
  • TA
  • TACTCCCTCTGTTTTATATTAAGTGTCATTGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
                           A     ------------ACCT    CACACAAATTAAGAAAACAATTAATTTTGTATATTTCCTATATAAAAACACAATTACCTATACACCTAATCATA
TACTCCCTCTGTTTTATATTAAGTGTC TTGTA                TGTG                                                                          
||||||||||||||||||||||||||| |||||                ||||                                                                          T
ATGAGGGAGGCAAAGTGTAATTCACAG AACAT                TGTT                                                                          
                           C     CTCTTAAAAAAATCAA    TTATTCACAACAAAAGCTAAAAATTACGTTTTAAATAATTAAAATACATCATTAAATAAAAAGATAACCAACTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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