SE0450130

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2500
  • Brassica rapa
  • SE0450130
  • PIF/harbinger
  • To6
  • A09:7607598-7607916
  • TTA
  • AGGGCATCTCCAATGTAACTCTATTTTTTCCTCTATAATTTACACAAAAATAGAGTAACTCTATTATAGTGTAACTTTTGCTCCAATGGTGTTACTCTATAATAGAGTTACTCTATTATAGAGTGAAATATAGAGGAATGTCATATTTTACTCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                                                                                                                                                -A          TA
  AGGGCATCTCCAATGTAACTCTATTTTTTCCTCTATAATTTACACAAAAATAGAGTAACTCTATTATAGTGTAACTTTTGCTCCAATGGTGTTACTCTATAATAGAGTTACTCTATTATAGAGTGAAATATAGAGGAATGTCAT  TTTTACTCTA  
  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||   
  TCCCGTAGAGGTTACATTGAGATAAAAAAGGAGATATTAAATGTGTTTTTATCTCATTGAGATAATATCACATTGAAAACGAGGTTACCACAATGAGATATTATCTCAATGAGATAATATCTCACTTTATATCTCCTTACAGTG  AAAGTGAGGT  
AT                                                                                                                                                AA          TT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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