SE0430131

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2501
  • Brassica rapa
  • SE0430131
  • hAT
  • Hat43
  • A07:6668210-6668396
  • TGTGTAGC
  • GTGTAGCCAGTGGCGGACGCAGATGGTAA

Secondary structure and sequence

TSD    TIR
5'



3'
T  GTA  -   T      C    -  G    -CGTAC           CCCCTAT    TTTTTATTTTTCTTTTAATAATTAGTACTAGCTTAAG
 GT   GC CAG GGCGGA GCAG AT GTAA      GGGGGCACGTG       CTAA                                     
 ||   || ||| |||||| |||| || ||||      |||||||||||       ||||                                     A
 CG   TG GTC CCGCCT CGTC TA TATT      CCCCCGTGTAC       TGTA                                     
   ATG  T   C      A    G  G    AATCTA           ----TAC    AAAAAGTCATACATATCAAGATCTTAACGTCCCGTAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End