Plant MITE

SE0430132

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2502
Brassica rapa
SE0430132
hAT
Hat44
A06:6745788-6746033
TCCACAGC
CAGTGGCGGAGCCA

Secondary structure and sequence

TSD TIR

5'

3'

TCCACAGC           C  CAT   T     -----------    --   C  T  ACCCAACAAAAATTTGAAAATTAGTGTAAGTTATTGAATTTTAATCTGTATGCCCCCATTCAAAAAAATTTG
        CAGTGGCGGAG CA   GCA CAAGA           TGGG  GGC AC GA                                                                        
        ||||||||||| ||   ||| |||||           ||||  ||| || ||                                                                         
        GTCACCGCCTC GT   TCT TTTAT           CGTA  TAT AA TT                                                                        
CGACACCT           C  ---   -     AAAACAACCCC    TT   -  T  ACCTGAATTTATATTATGATAAAAGATTTTTAAAATTCACCCAAATATCAAATTTGTTTCTATACCCCCGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430132

TCCACAGCCAGTGGCGGAGCCACATGCATCAAGATGGGGGCCACTGAACCCAACAAAAATTTGAAAATTAGTGTAAGTTATTGAATTTTAATCTGTATGCCCCCATTCAAAAAAATTTGTTGCCCCCATATCTTTGTTTAAACTATAAACCCACTTAAAATTTTTAGAAAATAGTATTATATTTAAGTCCATTTAATATTTATGCCCCCAACAAAATATTTTCTTGCCTCCGCCACTGTCCACAGC

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