SE0450138

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2508
  • Brassica rapa
  • SE0450138
  • PIF/harbinger
  • To28
  • A08:11474813-11475033
  • TAA
  • AGAGCACCATTAACCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA      C         T     --   CATTTGGGGTTTTTAACATTTTTTTTCTTTTATTAACCAATCGCGGGCCATCACGTGTTAGTGGGGTCCGCAAATACCATAAG
  AGAGCA CATTAACCC AAAAC  CCT                                                                                   
  |||||| ||||||||| |||||  |||                                                                                    
  TCTCGT GTAATTGGG GTGGA  ATT                                                                                   
AA      A         -     AA   CACCCAAGAATCCTCCACCCAGGGTGTTGAAATAATTTTTGGTGTAGAAGGAAGAGAAGACGTTCTCCGTTCAAACCACTCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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