SE0410139

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2509
  • Brassica rapa
  • SE0410139
  • Tc1/Mariner
  • St7
  • A01:7800235-7800484
  • TA
  • TCCCTCTGTTCCTTAATAATAGATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAC          C  T  TA         C   -   AATGTTTGTTTTAAAAAGATGTATTTTTTGTGTTTTCTATGAAAAAATTATAAATTTCAAGAAAATTAATTGACTTTATTGAATTACT
   TCCCTCTGTT CT AA  ATAGATTTT TAA AAA                                                                                        
   |||||||||| || ||  ||||||||| ||| |||                                                                                         
   AGGGAGACAA GA TT  TATCTGAAA AAT ATA                                                                                        
ATA          A  T  TC         -   A   AAAGTATGTATAATTCTTTTGTGTAATTTGATAGTATTATTTACATAGCAAAAGACATTAAAAGTCAAAAGTTATTGAAAATTGGTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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