Plant MITE

SE0450140

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2510
Brassica rapa
SE0450140
PIF/harbinger
To5
A01:11880340-11880548
TAA
AGGCCATGTTTATTGCAGGGTTCTTAGGATGAGGTTAGCGTAAAATAAGAACTGTTTCTTAACTTTAACTAAGAAAAACTAAGAACCGTCTCTTAAA

Secondary structure and sequence

TSD TIR

5'

3'

TA   C           C    T       A      ---        A                      -                      TC       ACT
  AGG CATGTTTATTG AGGG TCTTAGG TGAGGT   TAGCGTAA ATAAGAACTGTTTCTTAACTTT AACTAAGAAAAACTAAGAACCG  TCTTAAA   
  ||| ||||||||||| |||| ||||||| ||||||   |||||||| |||||||||||||||||||||| ||||||||||||||||||||||  |||||||   C
  TCC GTACAAATAAT TCTC AGAATCC ACTCTA   ATCGCATT TATTCTTGGCAGAGAATTGAAA TTGATTCTTTTTGATTCTTGGC  AGAATTT   
AA   C           C    T       C      AAA        A                      A                      CA       ATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0450140

TAAGGCCATGTTTATTGCAGGGTTCTTAGGATGAGGTTAGCGTAAAATAAGAACTGTTTCTTAACTTTAACTAAGAAAAACTAAGAACCGTCTCTTAAAACTCTTATTTAAGAACCGGTTCTTAGTTTTTCTTAGTTAAAAGTTAAGAGACGGTTCTTATATTACGCTAAAAATCTCACCCTAAGATCTCTCTAATAAACATGCCCTAA

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