Plant MITE

SE0450141

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2511
Brassica rapa
SE0450141
PIF/harbinger
To2
A05:22648142-22648459
TAA
AGAGCATCTCCAAAGGCACTCTATTTTTTCCTCTATAATTTACACTAAAATAGAGTAACTCTATTATAGAGTTAAATTTGCTCCAATGGTTCACTCTATAATAGAGTTACTCTATAATAGAGGGAAATATAGAGTATTTTTTGTTTTTTACTC

Secondary structure and sequence

TSD TIR

5'

3'

TA   G         A  C  T    TT   C       A     A                             AA                                               G                  TG          CAAA
  AGA CATCTCCAA GG AC CTAT  TTT CTCTATA TTTAC CTAAAATAGAGTAACTCTATTATAGAGTT  ATTTGCTCCAATGGTTCACTCTATAATAGAGTTACTCTATAATAGAG GAAATATAGAGTATTTTT  TTTTTTACTC    
  ||| ||||||||| || || ||||  ||| ||||||| ||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||     
  TCT GTAGAGGTT CC TG GATA  AAA GAGATAT AAGTG GATTTTATCTCATTGAGATAATATCTCAA  TAAACGAGGTTACCAAGTGAGATATTATCTCAATGAGATATTATCTC CTTTATATCTCATAAAAA  AAAAAGTGAG    
AA   G         A  A  T    TT   A       A     A                             CC                                               A                  CA          ATAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0450141

TAAGAGCATCTCCAAAGGCACTCTATTTTTTCCTCTATAATTTACACTAAAATAGAGTAACTCTATTATAGAGTTAAATTTGCTCCAATGGTTCACTCTATAATAGAGTTACTCTATAATAGAGGGAAATATAGAGTATTTTTTGTTTTTTACTCCAAATATAGAGTGAAAAAACAAAAATACTCTATATTTCACTCTATTATAGAGTAACTCTATTATAGAGTGAACCATTGGAGCAAATCCAACTCTATAATAGAGTTACTCTATTTTAGAGTGAAATATAGAGAAAATTATAGTGTACCATTGGAGATGGTCTAA

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