SE0450142

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2512
  • Brassica rapa
  • SE0450142
  • PIF/harbinger
  • To29
  • A06:23868494-23868735
  • TTA
  • AGAGCATGTGCATC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   G          G         --- ACTTGGGGTTTCAGATTTTTAATTTTTATTTTTTTATCTTTAAAAAAAAAAAAGAATCAATTGCGGACCGCCACATGTTAGTGGGGTCCGCGA
  AGA CATGTGCATC CTGGAACCC   C                                                                                             
  ||| |||||||||| |||||||||   |                                                                                              
  TCT GTACACGTAG CGCCTCAGG   C                                                                                             
AT   G          -         AAT TTCCAAAAAGTCCGCACCTGGGGCGTTTTTTTCTCTTTTTGGATATTCTTTTTGATACTTCATTCCTAGCTAAAAAAACCCAAAAACACTAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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