Plant MITE

SE0430143

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2513
Brassica rapa
SE0430143
hAT
Hat46
A07:2082984-2083153
GAAAAGAG
CAGTGGCAGAGCCA

Secondary structure and sequence

TSD TIR

5'

3'

GAAAAGAG       --A      CATACGACAAGA        ATGAACCCAACAAAATTAAACAAGTTAG    AC     G CT        T    TC
        CAGTGGC   GAGCCA            TGGGGGCA                            TGTA  TTAAA T  AATATATA GATG  
        |||||||   ||||||            ||||||||                            ||||  ||||| |  |||||||| ||||   
        GTCACCG   CTCGGT            ACCCCCGT                            ATAT  AATTT A  TTATATAT TTAC  
GAGAAAAG       CCC      ---CTCAAAACG        ----------------------------    AT     G TT        -    CC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430143

GAAAAGAGCAGTGGCAGAGCCACATACGACAAGATGGGGGCAATGAACCCAACAAAATTAAACAAGTTAGTGTAACTTAAAGTCTAATATATATGATGTCCCCATTTATATATTTTAGTTTAATATATATGCCCCCAGCAAAACTCTGGCTCCCCGCCACTGGAAAAGAG

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