Plant MITE

SE0430145

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2515
Brassica rapa
SE0430145
hAT
Hat47
A09:32989570-32989792
CTCCCTCC
CAGTGGCGGATCTAGAAAGTTTTATCGAGGGGGGCA

Secondary structure and sequence

TSD TIR

5'

3'

CTCCCTCC              GAA    T  TC A  -      ----     TTCAAATGTCAAAGAAGAATAACATTCAACCCTATATTTAAGATTTGATGGGGGCAAACTT
        CAGTGGCGGATCTA   AGTT TA  G GG GGGGCA    ACATT                                                             
        ||||||||||||||   |||| ||  | || ||||||    |||||                                                             A
        GTCACCGCCTAGAT   TCGG AT  C CC CCCCGT    GGGGT                                                             
CCTCCCTC              --G    T  TT -  A      CTAC     ATATTTAAAATATTTTGTACCTAAAAGAAATGATAAATATTGTCTAAAACCTTTAAAACCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430145

CTCCCTCCCAGTGGCGGATCTAGAAAGTTTTATCGAGGGGGGCAACATTTTCAAATGTCAAAGAAGAATAACATTCAACCCTATATTTAAGATTTGATGGGGGCAAACTTAACCAAAATTTCCAAAATCTGTTATAAATAGTAAAGAAAATCCATGTTTTATAAAATTTATATGGGGCATCTGCCCCACCCTTTATGGCTGTAGATCCGCCACTGCTCCCTCC

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