SE0410148

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2518
  • Brassica rapa
  • SE0410148
  • Tc1/Mariner
  • St5
  • A04:13529150-13529392
  • TA
  • T

Secondary structure and sequence

TSD    TIR
5'



3' 
TACTCCTTCTGTTCC      TT         AGAAAAAAAAATTGTTTTAAAAATATCTATTTTTTACATTTTCAAGATATGTTTTATTAACTAATTGCAAATTTCAAAAAACTTAATTGTT
               TTAATA  ACATATTTT                                                                                           
               ||||||  |||||||||                                                                                           T
               TAACGT  TAAGATATA                                                                                           
   ATGAAAAAATTA      -A         AAAAGTATGTAAAATTATTTTGTGTAATTTAAATTTATTAAAAAATACAAATAGAAACAAGATATTAAAATTCGGTTATTTTTAAATCATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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