SE0410151

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2521
  • Brassica rapa
  • SE0410151
  • Tc1/Mariner
  • St14
  • A08:1297539-1297789
  • TA
  • TACTCCCTCTGTTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
               TTAT        T     ---------CTCAAA     AAATATTAAGAAAAACTACTTTTTATCAAAATCATCACTAAATTATAATATAAAATTAGTTTATTTAATTATAAATA
TACTCCCTCTGTTTC    TACTTGAT TTTTA               TGCAC                                                                             
|||||||||||||||    |||||||| |||||               |||||                                                                              
ATGAGGGAGGCAAAG    ATGAACTA AAAAT               AAGTA                                                                             
               TTAT        C     CTCTTCAAAACAACA     ATATCTACTTCAAACGTGTTTAGATTCATTGAAATTGAAACAATTTTTGACACATTGGTTAACCTAAAAAATCAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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