SE0450152

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2522
  • Brassica rapa
  • SE0450152
  • PIF/harbinger
  • To25
  • A08:10047783-10048082
  • AAT
  • TAGCCGTGTTCGTTTGTTAACCGCAAGACGC

Secondary structure and sequence

TSD    TIR
5'



3'
AA               G   A           TCCC  T       -G     --GC    T   G   A    AATA    AA     A TTAAAGTA     CAACTATTTT   A  --C    AAA   A          C   TAAAATTTTC    TCCCT
  TAGCCGTGTTCGTTT TTA CCGCAAGACGC    GC GCGGCAA  AAAAA    ACGG GAT ATG TCAA    ATAG  ACTTA G        ACCGC          CGG GA   ACAA   ACG GACGCCGGTG CGC          AGCG     
  ||||||||||||||| ||| |||||||||||    || |||||||  |||||    |||| ||| ||| ||||    ||||  ||||| |        |||||          ||| ||   ||||   ||| |||||||||| |||          ||||      
  ATCGGCACAAGCAAA AAT GGCGTTCTGCG    CG CGTCGTT  TTTTT    TGCC TTA TGC AGTT    TGTT  TGGGT C        TGGCG          GCC CT   TGTT   TGC TTGTGGCTAC GCG          TCGT     
TA               G   C           ---T  C       GG     AATT    C   G   -    -GTG    -G     A --------     --------TC   G  AAT    --G   G          T   -------TCC    CATCT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End