SE0450153

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2523
  • Brassica rapa
  • SE0450153
  • PIF/harbinger
  • To5
  • A07:4951964-4952114
  • TTA
  • AGAGCATGTTTAATGGAAAGTTCTTAGGGTGGAGTTCTTAACGGAATATAAGAATTCGTTTCTTAACTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                 AA             A       AC  A           C        A     AA
  AGAGCATGTTTAATGGA  GTTCTTAGGGTGG GTTCTTA  GG ATATAAGAATT GTTTCTTA CTTTT  
  |||||||||||||||||  ||||||||||||| |||||||  || ||||||||||| |||||||| |||||  C
  TCTCGTACAAATTACCT  TAAGAATCCCACC CAAGAAT  CT TATATTTTTAG TAGAGAAT GAAAA  
AT                 CC             C       CA  A           A        C     AT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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