SE0430154

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2524
  • Brassica rapa
  • SE0430154
  • hAT
  • Hat49
  • A01:5676853-5677140
  • GCCGACGT
  • CGACGTCAGAGGCGGACCTA

Secondary structure and sequence

TSD    TIR
5'



3'
GC  A  -    A          ------CAT    T  T     --- GCAATTGAC      TAAAAATAAAAAATTAATTTGTAAGCTTATTTATGTATTGGATATTGGCTCAGTTGGTTATAGTTTGAACCCAGTGACCCCCCTTTTTCT
  CG CG TCAG GGCGGACCTA         AGAA GG GGGGG   T         ACAGGT                                                                                          
  || || |||| ||||||||||         |||| || |||||   |         ||||||                                                                                          G
  GC GC GGTC CCGCCTGGGT         AAAT GA CCCAG   T         AAGTTT                                                                                          
 T  A  C    A          CCTTTAAAA    G  -     TAT ---------      AAGTAAATTTGTAATTTGGGTTAATTTTGTTTATTACTAAAATATAATTTTTTTTTCTACTGTATATAGACACTCACGACTCCAAGCTTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End