SE0450155

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2525
  • Brassica rapa
  • SE0450155
  • PIF/harbinger
  • To1
  • A04:8321084-8321260
  • TAA
  • AGGGCATCTTCATCCCCACTCCATAATTTACTCCAAAAATAGAGTGGAAAATGGAGTATGAACAAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                                C     ATA                 -   ----        TAAAAATCT     TT
  AGGGCATCTTCATCCCCACTCCATAATTTACT CAAAA   GAGTGGAAAATGGAGTA TGA    ACAAAAAA         CTCTA  
  |||||||||||||||||||||||||||||||| |||||   ||||||||||||||||| |||    ||||||||         |||||   
  TCTCGTAGAGGTAGGGGTGAGGTATTAAATGA GTTTT   CTCACCTTTTACCTCAT ACT    TGTTTTTT         GAGGT  
AA                                C     -AC                 C   TCTT        -TCACTAAT     AT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3