SE0450156

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2526
  • Brassica rapa
  • SE0450156
  • PIF/harbinger
  • To1
  • A06:16795955-16796131
  • TCA
  • AGGGCATCTCCATCTCCACTTCATAATTTACTCCAAAAATGGAGTGGGAAATAGAGTATGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TC         C   C       C          C     A    G              -    CAAA         ----  C   - TAT
  AGGGCATCT CAT TCCACTT ATAATTTACT CAAAA TGGA TGGGAAATAGAGTA TGAA    AAATAAAAA    AT ACT C   
  ||||||||| ||| ||||||| |||||||||| ||||| |||| |||||||||||||| ||||    |||||||||    || ||| |   T
  TCTCGTAGA GTA AGGTGAG TATTAAATGA GTTTT ATCT GCCCTTTATCTCAT ACTT    TTTGTTTTT    TA TGA G   
AC         A   A       A          C     -    A              T    ---C         ACAC  A   A TAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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