SE0450160

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2530
  • Brassica rapa
  • SE0450160
  • PIF/harbinger
  • To27
  • A06:4527103-4527472
  • TAA
  • AGGCCAGCTCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C  G     ATGGA        A              -     TTATACCAAATCATCTCCAATGGAACTGCAAAAATCACATTATTTTAGTGCAACACTAAAATTTAATACCAAATTTGGTGTGACACTATTCACTACACTAAAACACTATTCATCCCACTAAAACACTATTCACTTATTTT
  AGG CA CTCCA     ACTGCAAA CACTATTTTAGTGT GATTT                                                                                                                                            
  ||| || |||||     |||||||| |||||||||||||| |||||                                                                                                                                            A
  TCC GT GAGGT     TGGTGTTT GTGATAAAATCACA TTTTA                                                                                                                                            
AA   A  A     -----        -              A     GTGTGATAAAATCACATTAAAATTGTGATTTTGGTTTCAGAATAGGTTGGTATTGTGATTTGAAATGTGATTTTGATAAAATATTATAATATACATAATTCAAAAAATAAATAGTAAATAAATTAACATACAAAATCATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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