SE0430161

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2531
  • Brassica rapa
  • SE0430161
  • hAT
  • Hat50
  • A07:17862163-17862394
  • CCTCCATC
  • CAGGGGTGAAG

Secondary structure and sequence

TSD    TIR
5'



3' 
CCTCCATC           TCAGGATCATTTT      ----------    C       ATACAAAA  -  GAAATGTAAAGAGGAATCGAAGCTTATACACCTAGGGGGTGCACACATGCAACCATCAC
        CAGGGGTGAAG             CTAGTG          GGTG ATAAGCT        TT TG                                                           
        |||||||||||             ||||||          |||| |||||||        || ||                                                           A
        GTCCCCGTTTT             GATCAC          CCCC TGTGTAC        GT GG                                                           
CTACCTCC           -------------      GTCGATGTTA    -       --------  G  TATTATAATAATTATTGTCAATAAATCATCATATATTTACAAGTAACTTTAGTCAATCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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