SE0430162

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2532
  • Brassica rapa
  • SE0430162
  • hAT
  • Hat4
  • A03:2237212-2237413
  • GTCCTCAT
  • ATCAGTGGCGGAGGTAGCATGTTGTGAGGGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
GTCCTC             G    AT ----  GT       ----   AAATGACCCATGTGAATTTTTGAAAAAAGAAAATTTTACATGTATTTTGAAGTTAA
      ATCAGTGGCGGAG TAGC  G    TT  GAGGGGT    GTC                                                        
      ||||||||||||| ||||  |    ||  |||||||    |||                                                        T
      TGGTCACCGCCTC GTCG  C    AG  CTCCCCA    ATG                                                        
 ACTCC             G    GT TGAA  AT       GTTA   TAATATTCGTATATTGTATACCCAGTTATCGATTTTAAACATTGGAAAAGAATCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3