SE0430163

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2533
  • Brassica rapa
  • SE0430163
  • hAT
  • Hat51
  • A07:19261052-19261306
  • CCGTTAAT
  • GTTAATCAGTGGCGGAGCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
CC      --              T    GTGGGAGGGGGGTCAGCTGACCCCTGTGATTTTTATAAAACATGAATTACACTTATATATTTTAGGTAGTTTTCAGAATATTTCGTTAAAAACCTTTAGT
  GTTAAT  CAGTGGCGGAGCTA GTGG                                                                                                    
  ||||||  |||||||||||||| ||||                                                                                                    T
  TAATTG  GTCACCGCCTCGAT GTAG                                                                                                    
        CC              C    TGTAAAATCTACCCAGTAAATGATTTGATTAATACATTTTAACAATTCTTCTATAATTTTACCCAGTTTTCTTTCTTAATCAAAACTCAATACCCCCAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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