SE0450165

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2535
  • Brassica rapa
  • SE0450165
  • PIF/harbinger
  • To5
  • A08:5097455-5097647
  • TTA
  • AGAGCATGTTTAATGAAGGTTTTTATAGTGGGTTTCTTAGCGGAATATAAGAACCCGTCTCTTAACTTTTAACTAAAAAAATAAAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                A        TA     T                        TC      C      C         A    CCCAGTT
  AGAGCATGTTTAATGA GGTTTTTA  GTGGG TTCTTAGCGGAATATAAGAACCCG  TCTTAA TTTTAA TAAAAAAAT AAGA       
  |||||||||||||||| ||||||||  ||||| ||||||||||||||||||||||||  |||||| |||||| ||||||||| ||||       C
  TCTCGTACAAATTACT CCAAAAAT  CACCT AAGAATCGCCTTATGTTCTTGGGC  AGAATT AAAATT ATTTTTTTG TTCT       
AT                C        CC     C                        TA      A      A         A    TTAAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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