SE0410171

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2541
  • Brassica rapa
  • SE0410171
  • Tc1/Mariner
  • St6
  • A06:16125546-16125789
  • TA
  • TACTC

Secondary structure and sequence

TSD    TIR
5'



3' 
     CCTC       A        T        AGAAAAAA      TTTCAAAATAAATGTCGTTTTAGAGTTTCAATGCAAAATTTATTAATAAGATTCTCCATTTTATTTTTATATTGGTT
TACTC    CGTTTCG TTTAATTG CGTTTTAG        ATTTTG                                                                             
|||||    ||||||| |||||||| ||||||||        ||||||                                                                              
ATGAG    GCAAAGT AAATTAAC GCAAGATC        AATACG                                                                             
     AAAA       A        C        ------CA      TGTGTCTAATTCTTTTATATATTAAAACATATAAAGATTTTATTTTTGTGTTAATGGATATGTGTATTGATATAAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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