Plant MITE

SE0450172

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2542
Brassica rapa
SE0450172
PIF/harbinger
To31
A02:22021453-22021635
TTA
AGAGCATGATTAATAGAGTTTCTTAGGGTGAGGCTTTTATCGGAATATAAGAAATGTCTCTTAATTTTTGATTAAAAAAACTAAGA

Secondary structure and sequence

TSD TIR

5'

3'

TT              A   T              C          A          -    C                          ATT
  AGAGCATGATTAAT GAG TTCTTAGGGTGAGG TTTTATCGGA TATAAGAAAT GTCT TTAATTTTTGATTAAAAAAACTAAGA   
  |||||||||||||| ||| |||||||||||||| |||||||||| |||||||||| |||| ||||||||||||||||||||||||||    
  TCTCGTACTAATTA CTT AAGAATTCCACTCT AAAATAGTCT ATATTCTTTG CAGA AATTGAAAATTGATTTTTTTGATTCT   
AT              C   C              A          C          G    A                          CGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0450172

TTAGAGCATGATTAATAGAGTTTCTTAGGGTGAGGCTTTTATCGGAATATAAGAAATGTCTCTTAATTTTTGATTAAAAAAACTAAGAATTGGCTCTTAGTTTTTTTAGTTAAAAGTTAAAAGACGGTTTCTTATACTCTGATAAAAATCTCACCTTAAGAACTTCCATTAATCATGCTCTTA

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