Plant MITE

SE0430175

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2545
Brassica rapa
SE0430175
hAT
Hat53
A06:16872119-16872382
TATAGATT
CAGGGCCGTGCCTGACT

Secondary structure and sequence

TSD TIR

5'

3'

TATAGATT                 ---AT     -GA  -    ACATGCTTGGGGCCTTGATATGTATAAGTATTTTAAGGGCCAATTTTTTTAACAAAATCTAGTTAGTTCTACTGGCCTATGTTCAATTT
        CAGGGCCGTGCCTGACT     AGGCT   TC AAGC                                                                                         
        |||||||||||||||||     |||||   || ||||                                                                                         T
        GTCCCGGCACGGACTGA     CCCGG   TT GTGT                                                                                         
TTAGATAT                 AAAAA     GGG  C    TTTATATAAAAACCGGGAAATTAATAAATAATACTTTTTTGTAATTTTTAATACCTCGTTTCTTAGCTTGGGGGTTAGGAAACATCCTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430175

TATAGATTCAGGGCCGTGCCTGACTATAGGCTGATCAAGCACATGCTTGGGGCCTTGATATGTATAAGTATTTTAAGGGCCAATTTTTTTAACAAAATCTAGTTAGTTCTACTGGCCTATGTTCAATTTTTTCCTACAAAGGATTGGGGGTTCGATTCTTTGCTCCATAATTTTTAATGTTTTTTCATAATAAATAATTAAAGGGCCAAAAATATATTTTGTGCTTGGGGGCCCAAAAAAGTCAGGCACGGCCCTGTATAGATT

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