Plant MITE

SE0430182

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2552
Brassica rapa
SE0430182
hAT
Hat14
A04:11230613-11231326
TACCAAAC
TAGGGGTGGGC

Secondary structure and sequence

TSD TIR

5'

3'

TACCAAAC           -ACTTTACCC   --  C     -------------  GCACCCGAACCCGATCCGAAAAAACCGAACCGAAATCCGAACCGAAGTAGCAAAATATCCGAACGGGTATTGAATAAGGAGAGATTGGATACCCGAACCCGAACGGATAATACCCGAACCCGAATGGATATCCGAAGATAACCGAACATATGTATAATTAACCTTATATTTCTAGTTTATATCTCTCATTTTATATAAAATATTTATATTGATACTACACATACTTTAAGTTCATATGATATACATACAATTACGGAAAAAATGATTTGCTACTCACTTAAAATGCATGTCAAGTTTTTTATTTCAAA
        TAGGGGTGGGC          GAT  AT CGAAG             TG                                                                                                                                                                                                                                                                                                                    
        |||||||||||          |||  || |||||             ||                                                                                                                                                                                                                                                                                                                    A
        ATCCCCACCCG          GGC  GC CCAAG             GC                                                                                                                                                                                                                                                                                                                    
CAAACCAT           CAAGCCCATA   AA  -     CCCAGCCCATAAA  CTAAAAGCCCATAAAGCCATATCTCCAGATCTTGGGCAAGCCCATAAAGACATGAAGTCCAGCCCAAGCCCATAAAAATCAAGCCTAAGCCAATAAAGCCTAGCCCAAGCCTATAAATCTAAAACTTTTTTTTTTATAATTTTAAAAGTAAAGAGTTCAAATAACATAAATTTTTATATTGAAAATCAATTGATTAAAAAATAAAAATTATCTAACTTACCAATTATCTAAACCTGTATTGTAAAATTTTGATTTTTCCGTAATTGAATCAATAAAAAAAATTTAAAACCTACATTGAAAAACAATTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430182

TACCAAACTAGGGGTGGGCACTTTACCCGATATCCGAAGTGGCACCCGAACCCGATCCGAAAAAACCGAACCGAAATCCGAACCGAAGTAGCAAAATATCCGAACGGGTATTGAATAAGGAGAGATTGGATACCCGAACCCGAACGGATAATACCCGAACCCGAATGGATATCCGAAGATAACCGAACATATGTATAATTAACCTTATATTTCTAGTTTATATCTCTCATTTTATATAAAATATTTATATTGATACTACACATACTTTAAGTTCATATGATATACATACAATTACGGAAAAAATGATTTGCTACTCACTTAAAATGCATGTCAAGTTTTTTATTTCAAAAATTAACAAAAAGTTACATCCAAAATTTAAAAAAAATAACTAAGTTAATGCCTTTTTAGTTTTAAAATGTTATGTCCAAATCTATTAACCATTCAATCTATTAAAAATAAAAAATTAGTTAACTAAAAGTTATATTTTTAAATACAATAAACTTGAGAAATGAAAATTTTAATATTTTTTTTTTCAAAATCTAAATATCCGAACCCGATCCGAAATAACCGAATCCGAACTAAAAATACCCGAACCCGACCTGAAGTACAGAAATACCCGAACGGGTTCTAGACCTCTATACCGAAATACCCGAAAATCCGAAATACCCGACCCGAACCCGAACGGATACCCGAACGCCCACCCCTATACCAAAC

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