Plant MITE

SE0450183

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2553
Brassica rapa
SE0450183
PIF/harbinger
To8
A03:23618054-23618337
TTA
AGAGCACCCCCATTAGTGAACTTATGGGGGGTTCACACACATT

Secondary structure and sequence

TSD TIR

5'

3'

TT      C                -   --           -C     -----    AAAAAAAAAAATTATTAAAATAAGGA          ACCTGTCTCTCTCCACCCCTTCTCAGTGAACCTGGTTCATCACTGTAGCGCGGGCCCCACGGCAC
  AGAGCA CCCCATTAGTGAACTT ATG  GGGGGTTCACA  ACATT     CCCA                          ATAGTGATGA                                                                 
  |||||| |||||||||||||||| |||  |||||||||||  |||||     ||||                          ||||||||||                                                                 G
  TCTCGT GGGGTAATCACTTGGG TAC  TCCCCAAGTGT  TGTAA     TAAA                          AAAAAAAAAA                                                                 
AT      A                G   TT           TT     AAAAA    --------------------------          CCCAACTAAAAACAAAAATTTTTTTTTTTTTTTTTAAAAAAAAAGCCGGGTCGGCGCCCGGCGGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0450183

TTAGAGCACCCCCATTAGTGAACTTATGGGGGGTTCACACACATTCCCAAAAAAAAAAAATTATTAAAATAAGGAATAGTGATGAACCTGTCTCTCTCCACCCCTTCTCAGTGAACCTGGTTCATCACTGTAGCGCGGGCCCCACGGCACGTGGCGGCCCGCGGCTGGGCCGAAAAAAAAATTTTTTTTTTTTTTTTTAAAAACAAAAATCAACCCAAAAAAAAAAAAATAAAAAAATGTTTTGTGAACCCCTTTCATGGGGTTCACTAATGGGGATGCTCTTA

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