Plant MITE

SE0450184

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2554
Brassica rapa
SE0450184
PIF/harbinger
To33
Scaffold000247:11992-12303
ATA
GGGTGCAACTGGATTACAA

Secondary structure and sequence

TSD TIR

5'

3'

ATA  G  C      A   -   -  TT         AATT -    ------------    G  CTATTCCTGCAGATTCCAAATTTTTTTTACCATTTGAAAACAAATCTCATTCCAATTATTCCTTATGGAATGTCTGGAAAAAAATGGAATGTAGTTATAAA
   GG TG AACTGG TTA CAA GT  TTGGAATGA    G TTTG            GAAT GC                                                                                                     
   || || |||||| ||| ||| ||  |||||||||    | ||||            |||| ||                                                                                                     A
   CC AC TTGACC AAT GTT AA  TATCTTATA    G ACTT            TTTT TT                                                                                                     
ATA  G  A      -   A   A  --         ---- T    ACTTACTTTAAT    -  ACCTTGCATCTACTTACCTTATTCTCTTCAATACCTTATTTTTTTTTAACTTAAGGTAAGGTGAGTAAGGTGAATAAGTACTCGAAAAAATAGGTACTTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0450184

ATAGGGTGCAACTGGATTACAAGTTTTTGGAATGAAATTGTTTGGAATGGCCTATTCCTGCAGATTCCAAATTTTTTTTACCATTTGAAAACAAATCTCATTCCAATTATTCCTTATGGAATGTCTGGAAAAAAATGGAATGTAGTTATAAAACATTCATGGATAAAAAAGCTCATGAATAAGTGGAATGAGTGGAATGGAATTCAATTTTTTTTTATTCCATAACTTCTCTTATTCCATTCATCTACGTTCCATTTTTTTAATTTCATTCATTCATGATATTCTATAAATTGATAACCAGTTACAGCCATA

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