SE0410185

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2555
  • Brassica rapa
  • SE0410185
  • Tc1/Mariner
  • St12
  • Scaffold000217:13606-13861
  • TA
  • TACTCCCTCTGTTTTTTATTGTAAGTAGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
                               ------       ATTTGTTTGTTTCAAAATATAAGTAGTTTTCATAATTTTAAGTAACTTTTACCTTTATCGGGTATAGTGCTACCAATCAAATAATAT
TACTCCCTCTGTTTTTTATTGTAAGTAGTTT      AAGCAAA                                                                                       
|||||||||||||||||||||||||||||||      |||||||                                                                                        
ATGAGGGAGACAAAAAATAACATTCATCAAA      TTACGTG                                                                                       
                               ATCTAC       TTTATAATTCTTTTAATAATTAAAAAAGTTTTCATCGTAAACTATATATTATTTAATCCATATCAATTTGGTTAGTATTTATTCGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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