SE0450188

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2558
  • Brassica rapa
  • SE0450188
  • PIF/harbinger
  • To13
  • A03:26493432-26493844
  • TTA
  • TAGGGGGGGTTAGTGGGAGTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
T        -          ---------    -----A   T TATAGAGTTGGTTGATTCTAAAAGTCAATAGATTTGTTAAATTTGTAAAGAGTTATAAAGAGTATTACATATTTTAAAAGTTTATGAAAATGTTTTAATTCAAGGATTTTAAGAATCTAGAGGAAATATGCAAGATTTTTGAAGTTTTGTCTTATGAGTAAAATTATCTAG
 TAGGGGGG GTTAGTGGGA         GTAG      ATT T                                                                                                                                                                           
 |||||||| ||||||||||         ||||      ||| |                                                                                                                                                                            
 ATTCCCCC CAATCACCCT         CATC      AAC T                                                                                                                                                                           
         A          ATACCTAAA    ACTAAC   - TTAAGAGTTTAAGATAACAATAACCAACCACCTAAGATTCTAAGAATAATTTCAGATCACAATAACTAAACTACTAACAAATTACTAAATGTTTTAGAGAACAATAAGTTTTTCAAATCAAAAATTACTAAGATTTAAAGGTAGTTTAGATCTCAATAACCCTTAATTTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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