SE0430190

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2560
  • Brassica rapa
  • SE0430190
  • hAT
  • Hat59
  • Scaffold000467:6356-6701
  • TGTGGCAG
  • TGTGGCAGCAGGGCCGTCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
    G   G    G       ATAATTT    TGGCCTAAAGCAAAAAAAACTTTTTGTGGCCTCTTATACAAATACCAACAATAAATAGTAACAAGCAACCCATACAAAAGTATATAGAATCATCGAATGGTAAAAAATTAAAACTATGTTGGGAAAAAGGAAGATAGAACTACAA
 TGT GCA CAGG CCGTCCC       TGAG                                                                                                                                                 
 ||| ||| |||| |||||||       ||||                                                                                                                                                 T
 ACG TGT GTCC GGCAGGG       ACGA                                                                                                                                                 
G   G   -    G       -------    TATTTCGTTGATTTCGTAGACGAAATCCGGTGTTTTATATTTGTTTTGTAATTCCGGTGTACAGTGACTCATAATCAAATCCAGTCTACCAAATTATCAAATTAAACTCAATCTTCTAGCATCAAAAAAAAAACATTGACTCGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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