SE0450192

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2562
  • Brassica rapa
  • SE0450192
  • PIF/harbinger
  • To34
  • A01:26782262-26782553
  • GAT
  • GGCTGTAACTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
GAT            TAAAACAAGAA   AATACATGGAATAGAAAGGAATGGAATAAGATGAATGGAATGCAGTAGAAAAATGGAATGGATTCATTCCATTTGTTCCTTATCAAAATTGTTATTGTTTTGGAATGTTTTGTTGCTTTGT
   GGCTGTAACTGG           ATG                                                                                                                         
   ||||||||||||           |||                                                                                                                         A
   CCGACGTTGACC           ACT                                                                                                                         
TAG            ---------TA   GGTAAAAACCTTACCTTACGAAACCTTACTAGTTAAGGTAATTAAGGTATTTTTTTAAATGGTAAATTGTACTTACCTTACCTTACGAGTAAGGTAGTTAAGGTTTTTTTAGATTAGTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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