SE0450193

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2563
  • Brassica rapa
  • SE0450193
  • PIF/harbinger
  • To5
  • A09:7854506-7854717
  • TTA
  • AGAGCATGATTAATGGAAAGTTCTTAGGGTGAGGTTTTTAGCGGAATATAAGAAACTGTCTCTTAACTTTTAACTAAAAAAACTAAGAACCGGCTCTTAAATAAGATATTTAAGAGCCGGTTCTTAGTTTTTTTAGTTAAAAGTTAAGAGGCAGTTTCTTATATTCCGCTAAAAACCCACACTAAGAACCCCTCATTAATCATGCTCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                AAA        G   A                                                                       A
  AGAGCATGATTAATGG   GTTCTTAG GTG GGTTTTTAGCGGAATATAAGAAACTGTCTCTTAACTTTTAACTAAAAAAACTAAGAACCGGCTCTTAAATA 
  ||||||||||||||||   |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| G
  TCTCGTACTAATTACT   CAAGAATC CAC CCAAAAATCGCCTTATATTCTTTGACGGAGAATTGAAAATTGATTTTTTTGATTCTTGGCCGAGAATTTAT 
AT                CCC        A   -                                                                       A
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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