SE0450194

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2564
  • Brassica rapa
  • SE0450194
  • PIF/harbinger
  • To35
  • A08:1714095-1714306
  • TAA
  • AGAGCATGTTTATTGCAGGTCTCTTAGGTTGATGTTTTTAGCGTAATATAAGATACGGTATCTTAGTTTTTAACAAAATAAGCTAAGAGACGTCTCTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                    C          AT                          A        T     A   T                    TATCT
  AGAGCATGTTTATTGCAGGT TCTTAGGTTG  GTTTTTAGCGTAATATAAGATACGGT TCTTAGTT TTAAC AAA AAGCTAAGAGACGTCTCTTA     
  |||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||||||||||     C
  TCTTGTACAAATAACGTCCA AGAATCCAAC  CAAAAATTGCATTATATTCTATGTTA AGAATTGA AATTG TTT TTCGATTCTCTGCGGAGAAT     
AA                    C          CT                          G        C     A   -                    TTAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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