SE0430196

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2566
  • Brassica rapa
  • SE0430196
  • hAT
  • Hat9
  • A09:23576876-23577095
  • CTGATACG
  • GCAGGGCCG

Secondary structure and sequence

TSD    TIR
5'



3' 
CTGATAC         ------------    AG   ATGGGGCAAGGAGGCGTGGGCCCAGGACCCTAACATTTTTTCATAAAAATAATATAAAAGAGGAGTCTAATTTAAAAATA
       GCAGGGCCG            GCTT  GCC                                                                                
       |||||||||            ||||  |||                                                                                 
       CGTCCCGGC            TACC  CGG                                                                                
GCATAGT         GAGTTCTATAAT    --   GAATCCATTTTTTTTAAAATCCAAAAAAAATGTACATATATACCTGTTAAATTTTAAAGACCCGAAGATAGGGATTAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3