Plant MITE

SE0450209

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2579
Brassica rapa
SE0450209
PIF/harbinger
To5
A07:8645828-8646039
TAA
TAAGAGCATGATTAATGGGTAGTTCTTATAGTGGGGGTTCTTAGCGGAATATAAGAAACCGTCTCTTAACTTTTAACTAAAAAAAACTAAGAACCCGCTTAAATATCTTATTTAAG

Secondary structure and sequence

TSD TIR

5'

3'

                   TA       TA      G      G              CC                         A       - -CCG        T
TAAGAGCATGATTAATGGG  GTTCTTA  GTGGGG TTCTTA CGGAATATAAGAAA  GTCTCTTAACTTTTAACTAAAAAAA CTAAGAA C    CTTAAATA 
|||||||||||||||||||  |||||||  |||||| |||||| ||||||||||||||  ||||||||||||||||||||||||| ||||||| |    |||||||| C
ATTCTCGTACTAATTACCC  CAAGAAT  CACTCT AAGAAT GCCTTATATTCTTT  CAGGGAATTGAAAATTGATTTTTTT GATTCTT G    GAATTTAT 
                   -C       CC      -      A              AA                         -       A CCAA        T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0450209

TAAGAGCATGATTAATGGGTAGTTCTTATAGTGGGGGTTCTTAGCGGAATATAAGAAACCGTCTCTTAACTTTTAACTAAAAAAAACTAAGAACCCGCTTAAATATCTTATTTAAGAACCGATTCTTAGTTTTTTTAGTTAAAAGTTAAGGGACAATTTCTTATATTCCGATAAGAATCTCACCCTAAGAACCCCCATTAATCATGCTCTTA

Copy Cancel