SE0410213

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2583
  • Brassica rapa
  • SE0410213
  • Tc1/Mariner
  • St5
  • A02:16790306-16790556
  • TA
  • TACTCCCTCTGTTTTTAAAAGATG

Secondary structure and sequence

TSD    TIR
5'



3' 
                        CATATTTTA  T     ACATATATTAAGAAAACTCATTAAACATGCATTGTTTTTTGTGAATAACAATTTTCCATAACTTTAAACCAATAAAAATTCAATAAACA
TACTCCCTCTGTTTTTAAAAGATG         GA TTTTC                                                                                         
||||||||||||||||||||||||         || |||||                                                                                          
ATGAGGGAGGCAAGGATTTTCTAC         TA CAAGA                                                                                         
                        --------A  -     CCTTTTTTTTTAACAAAATTTTTCTATGTAAAAAATGAAAAAGTTACATACTAAAATACTTTTTAACATTCAAAGTTTTTTTAATTACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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