Plant MITE

SE0410215

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2585
Brassica rapa
SE0410215
Tc1/Mariner
St1
A03:8875456-8875707
TA
TACTCCCTCTGTTTCAAAATAGTTGATGTTTTGG

Secondary structure and sequence

TSD TIR

5'

3'

                      T           TTCAATGCACA   -ATTAA       ACTTTTACCTAAAAAAATAGCATTTAAAATATAAACTAAAACAAATTCA      CATGAAGAAAACTATAAAACAT
TACTCCCTCTGTTTCAAAATAG TGATGTTTTGG           AGA      GAAATAC                                                 ACCAAT                      
|||||||||||||||||||||| |||||||||||           |||      |||||||                                                 ||||||                       
ATGAGGGAGGCAAAGTTTTATC ACTACAAAACC           TCT      TTTTATG                                                 TCGAAA                      
                      T           ---TCTCAAAA   ACAAAG       --------------------AACTACAAAACTATAAAATATAATCAAAA      TAACTTTTGACACACTGGTTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0410215

TACTCCCTCTGTTTCAAAATAGTTGATGTTTTGGTTCAATGCACAAGAATTAAGAAATACACTTTTACCTAAAAAAATAGCATTTAAAATATAAACTAAAACAAATTCAACCAATCATGAAGAAAACTATAAAACATCATTGGTCACACAGTTTTCAATAAAGCTAAAACTAATATAAAATATCAAAACATCAAGTATTTTGAAACATCTAAAACTCTCCAAAACATCATCTATTTTGAAACGGAGGGAGTA

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