SE0430216

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2586
  • Brassica rapa
  • SE0430216
  • hAT
  • Hat66
  • A01:4516155-4516931
  • CTATTGGA
  • CTATTGGACAGCGTTTTTAAACCCAGACCG

Secondary structure and sequence

TSD    TIR
5'



3'
    T   A   C         C  A     -AACC     T  -  C --  A CGAACCATGAACCGAAAATAATCTGGGTTGGGTTAATGATAAAACCCAACTAAAATCGAACCAGTTAAAAATTCCTATCGAATGTAAAAAACCTGGAAACCTGGAAACAATAAACTGACCAAATCTCGATTTGTATATAAGCCAAAATTTTGTTAATGAAACAATTAATTTTTCTTCTTTTTTAAGTAAAAATAAAATTTATCAAAGATTAATAAAGTATTGTTTCTCGTCTTTTTCTTTTATCGTCTCTACAACTCATAAATTACAAGATTCAAGATGTTGTTTCTGTCTACTTTTCACTTTGTTTAAATTTTTATTTCATGATCACTTGTTTTGAA
 CTA TGG CAG GTTTTTAAA CC GACCG     AGTGG CA GA C  GG T                                                                                                                                                                                                                                                                                                                                                  
 ||| ||| ||| ||||||||| || |||||     ||||| || || |  || |                                                                                                                                                                                                                                                                                                                                                   
 GGT ATC GTC CAAAAATTT GG CTGGC     GCTTG GT TT A  AA A                                                                                                                                                                                                                                                                                                                                                  
G   T   -   A         T  C     CGATC     -  C  - AA  - ACCCAGTATTTAATAACACCAAGCTGGCTAGACTTAGCCCAAGTTAGCCCAAATGAATCTAATTTGATTTAAATTAGTAGAAAATATTTATTATACGTATAAAAAAATTTTTTTATATAGTATAGTTTATTTTATAAATTTATCGGTATTACATATCTTTTTGAATTTTTAATTTTAATTTTAAATTTTAGTTATACTTTTCGTGTAAATTTGAAAAAAGTGTCTAGAATAGTGAGATTTAGAAGTAGTGGAAATTTTTTTTAATATATGTGTAATCCATTTTCAATATAAAACTTTATGTTTAAAGTCTTTGTATTTACAAAGTTAATAAATTTAAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End